Package: abctools 1.1.8

Matt Nunes

abctools: Tools for ABC Analyses

Tools for approximate Bayesian computation including summary statistic selection and assessing coverage. See Nunes and Prangle (2015) <doi:10.32614/RJ-2015-030> and Rodrigues, Prangle and Sisson (2018) <doi:10.1016/j.csda.2018.04.004>.

Authors:Matt Nunes [aut, cre], Dennis Prangle [aut], Guilherme Rodrigues [ctb]

abctools_1.1.8.tar.gz
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abctools_1.1.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
abctools/json (API)

# Install 'abctools' in R:

install.packages('abctools', repos = c('https://dennisprangle.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dennisprangle/abctools/issues

Uses libs:

openblas– Optimized BLAS

Datasets:

coal - Examples of coalescent data
coalobs - Examples of coalescent data

On CRAN:

openblas

4.84 score 6 stars 114 scripts 423 downloads 2 mentions 18 exports 68 dependencies

Last updated from:34eacc07f7. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	154
linux-devel-x86_64	OK	171
source / vignettes	OK	190
linux-release-arm64	OK	170
linux-release-x86_64	OK	175
macos-release-arm64	OK	338
macos-release-x86_64	OK	347
macos-oldrel-arm64	OK	219
macos-oldrel-x86_64	OK	503
windows-devel	OK	112
windows-release	OK	118
windows-oldrel	OK	149
wasm-release	OK	121

Exports:AS.select AS.test combmat cov.mc cov.pi covstats.mc covstats.pi fillcomb mc.ci mincrit nn.ent recalibrationABC rsse saABC selectsumm semiauto.abc sse stage2

Dependencies:abc abc.data abind backports base64enc bslib cachem checkmate cli cluster colorspace cpp11 data.table digest evaluate farver fastmap fontawesome foreign Formula fs ggplot2 glue gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets isoband jquerylib jsonlite knitr labeling lattice lifecycle locfit magrittr MASS Matrix MatrixModels memoise mime nnet plyr quantreg R6 rappdirs RColorBrewer Rcpp rlang rmarkdown rpart rstudioapi S7 sass scales SparseM stringi stringr survival tinytex vctrs viridisLite withr xfun yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Tools for ABC analyses	abctools-package abctools
Summary statistics selection using approximate sufficiency.	AS.select
Test for relative approximate sufficiency between two posterior samples.	AS.test
Examples of coalescent data	coal coalobs
table of combinations	combmat combtable fillcomb
Coverage property diagnostics	cov.mc cov.pi covstats.mc covstats.pi
Diagnostic plots for model choice coverage output	mc.ci
Summary statistics selection by minimizing a posterior sample measure.	mincrit
Works out entropy of a sample.	nn.ent
ABC inference with a recalibration adjustment	recalibrationABC
Simulation error measures.	rsse sse
Summary statistic construction by semi-automatic ABC	saABC
Generic function for selecting summary statistics in ABC inference.	selectsumm
Performs semi-automatic ABC based on summary statistics regression.	semiauto.abc
stage2	stage2