{ "_id": "6a36388c3efcd9bda43f94e1", "Package": "abctools", "Type": "Package", "Title": "Tools for ABC Analyses", "Version": "1.1.8", "Date": "2025-07-25", "Authors@R": "c(\nperson(\"Matt\",\"Nunes\",role=c(\"aut\",\"cre\"),email=\"nunesrpackages@gmail.com\"),\nperson(\"Dennis\",\"Prangle\",role=\"aut\",email=\"dennis.prangle@bristol.ac.uk\"),\nperson(\"Guilherme\",\"Rodrigues\",role=\"ctb\",email=\"guilhermeest@yahoo.com.br\"))", "Description": "Tools for approximate Bayesian computation including\nsummary statistic selection and assessing coverage. See Nunes\nand Prangle (2015) and Rodrigues,\nPrangle and Sisson (2018) .", "License": "GPL (>= 2)", "LazyLoad": "yes", "URL": "https://github.com/dennisprangle/abctools", "BugReports": "https://github.com/dennisprangle/abctools/issues", "NeedsCompilation": "yes", "Author": "Matt Nunes [aut, cre], Dennis Prangle [aut], Guilherme\nRodrigues [ctb]", "Maintainer": "Matt Nunes ", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev", "Repository": "https://dennisprangle.r-universe.dev", "Date/Publication": "2025-07-25 09:56:56 UTC", "RemoteUrl": "https://github.com/dennisprangle/abctools", "RemoteRef": "HEAD", "RemoteSha": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "Packaged": { "Date": "2026-06-20 06:45:50 UTC", "User": "root" }, "MD5sum": "68d5531d832c315720645fe75e066e09", "_user": "dennisprangle", "_type": "src", "_file": "abctools_1.1.8.tar.gz", "_fileid": "a2111c3a402f3121caeab27c363306e99f18a12a9c1cd900991654d636554f2f", "_filesize": 2845799, "_sha256": "a2111c3a402f3121caeab27c363306e99f18a12a9c1cd900991654d636554f2f", "_created": "2026-06-20T06:45:50.000Z", "_published": "2026-06-20T06:51:56.685Z", "_distro": "noble", "_jobs": [ { "job": 82462962324, "time": 168, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7762954976" }, { "job": 82462962335, "time": 130, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7762950712" }, { "job": 82462962327, "time": 177, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7762956128" }, { "job": 82462962338, "time": 158, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7762953803" }, { "job": 82462962330, "time": 165, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7762957948" }, { "job": 82462962337, "time": 299, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7762969802" }, { "job": 82462962334, "time": 173, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7762956166" }, { "job": 82462962320, "time": 276, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7762966739" }, { "job": 82462764669, "time": 196, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7762936312" }, { "job": 82462962267, "time": 118, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7762949527" }, { "job": 82462962289, "time": 162, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7762954213" }, { "job": 82462962286, "time": 157, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7762953553" }, { "job": 82462962282, "time": 131, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7762950900" } ], "_buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/dennisprangle/abctools", "_commit": { "id": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "author": "nunesmatt <36892736+nunesmatt@users.noreply.github.com>", "committer": "GitHub ", "message": "Add files via upload\n\nupdated \\link references to include abc package direction in the link where appropriate", "time": 1753437416 }, "_maintainer": { "name": "Matt Nunes", "email": "nunesrpackages@gmail.com" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "abc", "role": "Depends" }, { "package": "abind", "role": "Depends" }, { "package": "parallel", "role": "Depends" }, { "package": "plyr", "role": "Depends" }, { "package": "Hmisc", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "abc.data", "role": "Suggests" } ], "_owner": "dennisprangle", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 2 } ], "_tags": [], "_stars": 6, "_contributors": [ { "user": "dennisprangle", "count": 53, "uuid": 8407822 }, { "user": "nunesmatt", "count": 4, "uuid": 36892736 } ], "_userbio": { "uuid": 8407822, "type": "user", "name": "Dennis Prangle", "followers": 26 }, "_downloads": { "count": 370, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/abctools" }, "_mentions": 2, "_devurl": "https://github.com/dennisprangle/abctools", "_searchresults": 108, "_topics": [ "openblas" ], "_rbuild": "4.6.0", "_assets": [ "extra/abctools.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/dennisprangle/abctools", "_realowner": "dennisprangle", "_cranurl": true, "_releases": [ { "version": "0.1-2", "date": "2013-02-22" }, { "version": "0.2", "date": "2013-05-20" }, { "version": "0.2-2", "date": "2013-12-18" }, { "version": "0.3-2", "date": "2014-06-25" }, { "version": "1.0", "date": "2014-12-16" }, { "version": "1.0.2", "date": "2015-05-29" }, { "version": "1.0.3", "date": "2015-07-15" }, { "version": "1.0.4", "date": "2016-01-14" }, { "version": "1.1.1", "date": "2017-04-20" }, { "version": "1.1.3", "date": "2018-07-17" }, { "version": "1.1.4", "date": "2022-11-02" }, { "version": "1.1.6", "date": "2023-03-26" }, { "version": "1.1.7", "date": "2023-09-18" }, { "version": "1.1.8", "date": "2025-07-25" } ], "_exports": [ "AS.select", "AS.test", "combmat", "cov.mc", "cov.pi", "covstats.mc", "covstats.pi", "fillcomb", "mc.ci", "mincrit", "nn.ent", "recalibrationABC", "rsse", "saABC", "selectsumm", "semiauto.abc", "sse", "stage2" ], "_datasets": [ { "name": "coal", "title": "Examples of coalescent data", "object": "coal", "file": "coal.rda", "class": [ "matrix", "array" ], "fields": [ "theta", "rho", "segsites", "unif", "meandiff", "R2", "nhap", "fhap", "shap" ], "rows": 100000, "table": true, "tojson": true }, { "name": "coalobs", "title": "Examples of coalescent data", "object": "coalobs", "file": "coalobs.rda", "class": [ "matrix", "array" ], "fields": [ "theta", "rho", "segsites", "unif", "meandiff", "R2", "nhap", "fhap", "shap" ], "rows": 100, "table": true, "tojson": true } ], "_help": [ { "page": "abctools-package", "title": "Tools for ABC analyses", "topics": [ "abctools-package", "abctools" ] }, { "page": "AS.select", "title": "Summary statistics selection using approximate sufficiency.", "topics": [ "AS.select" ] }, { "page": "AS.test", "title": "Test for relative approximate sufficiency between two posterior samples.", "topics": [ "AS.test" ] }, { "page": "coal", "title": "Examples of coalescent data", "topics": [ "coal", "coalobs" ] }, { "page": "combmat", "title": "table of combinations", "topics": [ "combmat", "combtable", "fillcomb" ] }, { "page": "cov.pi", "title": "Coverage property diagnostics", "topics": [ "cov.mc", "cov.pi", "covstats.mc", "covstats.pi" ] }, { "page": "mc.ci", "title": "Diagnostic plots for model choice coverage output", "topics": [ "mc.ci" ] }, { "page": "mincrit", "title": "Summary statistics selection by minimizing a posterior sample measure.", "topics": [ "mincrit" ] }, { "page": "nn.ent", "title": "Works out entropy of a sample.", "topics": [ "nn.ent" ] }, { "page": "recalibrationABC", "title": "ABC inference with a recalibration adjustment", "topics": [ "recalibrationABC" ] }, { "page": "rsse", "title": "Simulation error measures.", "topics": [ "rsse", "sse" ] }, { "page": "saABC", "title": "Summary statistic construction by semi-automatic ABC", "topics": [ "saABC" ] }, { "page": "selectsumm", "title": "Generic function for selecting summary statistics in ABC inference.", "topics": [ "selectsumm" ] }, { "page": "semiauto.abc", "title": "Performs semi-automatic ABC based on summary statistics regression.", "topics": [ "semiauto.abc" ] }, { "page": "stage2", "title": "stage2", "topics": [ "stage2" ] } ], "_readme": "https://github.com/dennisprangle/abctools/raw/HEAD/README.md", "_rundeps": [ "abc", "abc.data", "abind", "backports", "base64enc", "bslib", "cachem", "checkmate", "cli", "cluster", "colorspace", "cpp11", "data.table", "digest", "evaluate", "farver", "fastmap", "fontawesome", "foreign", "Formula", "fs", "ggplot2", "glue", "gridExtra", "gtable", "highr", "Hmisc", "htmlTable", "htmltools", "htmlwidgets", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lifecycle", "locfit", "magrittr", "MASS", "Matrix", "MatrixModels", "memoise", "mime", "nnet", "plyr", "quantreg", "R6", "rappdirs", "RColorBrewer", "Rcpp", "rlang", "rmarkdown", "rpart", "rstudioapi", "S7", "sass", "scales", "SparseM", "stringi", "stringr", "survival", "tinytex", "vctrs", "viridisLite", "withr", "xfun", "yaml" ], "_sysdeps": [ { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" } ], "_score": 4.811575005870593, "_indexed": true, "_nocasepkg": "abctools", "_universes": [ "dennisprangle" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.8", "date": "2026-06-20T06:48:17.000Z", "distro": "noble", "arch": "aarch64", "commit": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "fileid": "76993b5d6303dc764c5655f4daf8173822f2f98dc13d0fb1c1f103b5a464c94a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596" }, { "r": "4.7.0", "os": "linux", "version": "1.1.8", "date": "2026-06-20T06:47:51.000Z", "distro": "noble", "arch": "x86_64", "commit": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "fileid": "28d5fdefbd310ce4ed78336119eede23d4ccbc835a96d8fe691465be7025e5d7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596" }, { "r": "4.6.0", "os": "linux", "version": "1.1.8", "date": "2026-06-20T06:48:33.000Z", "distro": "noble", "arch": "aarch64", "commit": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "fileid": "3e2cec805b8d49d712546703f1384e2bb00a897c91dae1826575a72f2fe02292", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596" }, { "r": "4.6.0", "os": "linux", "version": "1.1.8", "date": "2026-06-20T06:48:06.000Z", "distro": "noble", "arch": "x86_64", "commit": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "fileid": "3a57d90ef6f08f61404f8ffac94b083f713b73f302284f81c0c12605300d204a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596" }, { "r": "4.5.3", "os": "mac", "version": "1.1.8", "date": "2026-06-20T06:49:02.000Z", "arch": "aarch64", "commit": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "fileid": "77598cd467b86310c71cfba13a62552874cc2a6f75321a508d5c7af8a5ff63af", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596" }, { "r": "4.5.3", "os": "mac", "version": "1.1.8", "date": "2026-06-20T06:50:11.000Z", "arch": "x86_64", "commit": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "fileid": "a6460029cdecec8900163a29581a2729d5c8229e74f551a6a2b9938e0cd66fc2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596" }, { "r": "4.6.0", "os": "mac", "version": "1.1.8", "date": "2026-06-20T06:48:36.000Z", "arch": "aarch64", "commit": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "fileid": "196cb1bca5c50a497f83d2f4ea3c380d4e01674a11d5673d913743cbbaee9771", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596" }, { "r": "4.6.0", "os": "mac", "version": "1.1.8", "date": "2026-06-20T06:49:41.000Z", "arch": "x86_64", "commit": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "fileid": "94c07602b6e569b1c3cd8afaa73ab86aec696e339d19c4c360289510c36515cd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.8", "date": "2026-06-20T06:48:12.000Z", "arch": "emscripten", "commit": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "fileid": "dc929dfb169bfe67af67d60e11d6b67ad9467788522f5e3f61c08433cbc28ed3", "status": "success", "buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596" }, { "r": "4.7.0", "os": "win", "version": "1.1.8", "date": "2026-06-20T06:47:55.000Z", "arch": "x86_64", "commit": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "fileid": "a1c28e6bfa541daec270ea84f849e3241e8ad649d9c6fbef8c78eb45b4a985b3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596" }, { "r": "4.5.3", "os": "win", "version": "1.1.8", "date": "2026-06-20T06:47:52.000Z", "arch": "x86_64", "commit": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "fileid": "53e24533323e2e6a0beae0da1be2d834c822e85e756369f4c69149f6b52efcf5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596" }, { "r": "4.6.0", "os": "win", "version": "1.1.8", "date": "2026-06-20T06:47:22.000Z", "arch": "x86_64", "commit": "34eacc07f74f79d31581d7c2ca9dbede4c637331", "fileid": "480996bea3d7214fe5e1016eb5b22cc29ab6dd0ac13e341e09c60cb8a1e71bb3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dennisprangle/actions/runs/27863216596" } ] }